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Proteomics

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Identifying Subcellular Structure Components in Escherichia Coli by Crosslinking and SEC‐MS

PROTEOMICS, EarlyView.

— Rachel A. Victor, Austin Lipinski, Paul R. Langlais, Jacob C. Schwartz 2026-01-21 18:36:01

Quantitative Proteomics Reveals the Adaptive Mechanisms of Aeromonas hydrophila Under Cobalt Stress

PROTEOMICS, EarlyView.

— Xiaowei Zhang, Chenghao Shen, Zhen Qiu, Linbin Chen, Binghui Zhang, Chunyan Jia, Jinting Guo, Feiliao Lai, Xiangmin Lin 2026-01-20 19:05:13

Issue Information: Proteomics 23'25

PROTEOMICS, Volume 26, Issue 1, Page 1-5, January 2026.

2026-01-15 18:53:52

Progress of Deep Learning Prediction of CD8+ T‐Cell Epitopes

PROTEOMICS, Volume 26, Issue 1, Page 6-21, January 2026.

— Xiaorui Cheng, Haixia Wu, Pengji Chen, Rui Liu, Yuanyuan Lei, Hu Mei, Pingqing Wang 2026-01-15 18:53:52

Elenbecestat and Compound 89 Potently Inhibit BACE1 but Not BACE2 When Subchronically Dosed in Non‐Human Primates

PROTEOMICS, Volume 26, Issue 1, Page 100-107, January 2026.

— Sarah K. Tschirner, Andree Schmidt, Mana Ito, Kana Hyakkoku, Akimasa Yoshimura, Stephan A. Müller, Naotaka Horiguchi, Stefan F. Lichtenthaler 2026-01-15 18:53:52

A Proteomics Resource Investigating Fibrosis: Proof‐of‐Concept for Identifying Novel Drug Candidates

PROTEOMICS, Volume 26, Issue 1, Page 94-99, January 2026.

— Hanne Devos, Manousos Makridakis, Rafael Stroggilos, Mayra Alejandra Jaimes Campos, Aggeliki Tserga, Marika Mokou, Maria G. Roubelakis, Jerome Zoidakis, Antonia Vlahou, Agnieszka Latosinska 2026-01-15 18:53:52

Plasma Extraction by Acetonitrile and Trichloroacetic Acid With Dithiothreitol and Combination for Low Molecular Weight Proteome Analysis

PROTEOMICS, Volume 26, Issue 1, Page 22-31, January 2026.

— Ting Liu, Shenjian Xu, Chengzhuo Chu, Kun Jiang, Jiaojiao Sha, Liangjia Du, Dezhu Chen, Minqi Cai, Yiqiang Chen, Bing Bai 2026-01-15 18:53:52

Urinary Peptidomic Profiling In Post‐Acute Sequelae of SARS‐CoV‐2 Infection: A Case‐Control Study

PROTEOMICS, Volume 26, Issue 1, Page 32-43, January 2026.

— Dilara Gülmez, Justyna Siwy, Katharina Kurz, Ralph Wendt, Miroslaw Banasik, Björn Peters, Emmanuel Dudoignon, Francois Depret, Mercedes Salgueira, Elena Nowacki, Amelie Kurnikowski, Sebastian Mussnig, Simon Krenn, Samuel Gonos, Judith Löffler‐Ragg, Günter Weiss, Harald Mischak, Manfred Hecking, Eva Schernhammer, Joachim Beige, UriCoV Working Group 2026-01-15 18:53:52

Metabolic Profiling of the EmDia Cohort by LC‐MS Reveals Empagliflozin‐Intake Associated Regulation of 1,5‐anhydroglucitol and Urate

PROTEOMICS, Volume 26, Issue 1, Page 44-56, January 2026.

— Fabian Schmitt, Vincent ten Cate, Zlatka Fischer, Mathias Hagen, Barbara A. Steigenberger, Stefan Tenzer, Philipp S. Wild, Thierry Schmidlin 2026-01-15 18:53:52

Time‐Enduring Proteomic Fidelity in Over 30‐Year‐Old FFPE Tissues: Distinct Proteomic Signatures of Hepatocellular Carcinoma and Adjacent Non‐Tumor Liver Tissue

PROTEOMICS, Volume 26, Issue 1, Page 57-67, January 2026.

— Yuki Adachi, Masatsugu Ishii, Rei Noguchi, Nobuyoshi Hiraoka, Hideki Yokoo, Yuki Yoshimatsu, Sumio Ohtsuki, Tadashi Kondo 2026-01-15 18:53:52

In‐Cell Proteomics Enables High‐Resolution Temporal Profiling of Cell Cycle Progression and DNA Damage Response in Saccharomyces cerevisiae

PROTEOMICS, Volume 26, Issue 1, Page 82-93, January 2026.

— Henry Nwaora, Yanbao Yu, Zhihao Zhuang 2026-01-15 18:53:52

Performance Characteristics of Zeno Trap Scanning DIA for Sensitive and Quantitative Proteomics at High Throughput

PROTEOMICS, Volume 26, Issue 1, Page 68-81, January 2026.

— Ludwig R. Sinn, Ziyue Wang, Claudia P. Alvarez, Anjali Chelur, Ihor Batruch, Patrick Pribil, Daniela Ludwig, Stephen Tate, Jose Castro‐Perez, Christoph B. Messner, Vadim Demichev, Markus Ralser 2026-01-15 18:53:52

Guest Editorial: Ion Mobility‐Mass Spectrometry in Omics

PROTEOMICS, EarlyView.

— Aivett Bilbao, Tim Causon 2026-01-13 19:10:07

Proteomic and Lipidomic Profiling of Immune Cell‐Derived Subpopulations of Extracellular Vesicles

PROTEOMICS, EarlyView.

— Anna Lischnig, Nasibeh Karimi, Per Larsson, Karin Ekström, Rossella Crescitelli, Anna‐Carin Olin, Cecilia Lässer 2026-01-10 09:57:25

Brownotate, a Comprehensive Solution to Generate Protein Sequence Databases for Any Species

PROTEOMICS, EarlyView.

— Adrien Brown, Alexandre Burel, Sarah Cianférani, Christine Carapito, Fabrice Bertile 2026-01-06 12:36:18

Proteomics in Practice: A Case Study Highlighting Tandem Mass Tag‐Based MS for Quantitative Profiling of Extracellular Vesicles and Application to Irradiated Fibroblasts

PROTEOMICS, EarlyView.

— Greg Berumen Sánchez, Purvi Patel, Kristie Lindsey Rose, Marjan Rafat 2025-12-30 19:07:12

Assessing Discrepancies in miRNA Profiles of Mouse Blood‐Derived Extracellular Vesicles: A Systematic Review of Sequencing Data

PROTEOMICS, EarlyView.

— Md Sorwer Alam Parvez, Erika Hayakawa, Yoritsugu Iida, Katsuyuki Takeuchi, Takeshi Hase, Kaoru Mogushi, Eisuke Dohi 2025-12-30 20:00:00

Proteome‐Wide Analysis of Palmitoylated Proteins in Macrophages Reveals Novel Insights Into Early Immune Signaling

PROTEOMICS, EarlyView.

— Hyojung Kim, Jiraphorn Issara‐Amphorn, Sung Hwan Yoon, Anirban Banerjee, Aleksandra Nita‐Lazar 2025-12-28 19:57:28

Advancing Understanding of the Protein Composition of Human Seminal Extracellular Vesicles

PROTEOMICS, EarlyView.

— Cottrell T. Tamessar, Shanmathi Parameswaran, Elizabeth Torres‐Arce, Judith Weidenhofer, Hui‐Ming Zhang, Jess E. Mulhall, Sarah A. Robertson, Elizabeth G. Bromfield, Brett Nixon, David J. Sharkey, David A. Skerrett‐Byrne, John E. Schjenken 2025-12-12 13:24:04

Proteomics Advances in Immunology and Infection Research

PROTEOMICS, EarlyView.

— Aleksandra Nita‐Lazar 2025-12-10 19:04:34

Probing Early α‐Synuclein Oligomers: Insights Into Aggregation Pathways of NACore and preNAC Segments Probed by Trapped Ion‐Mobility Mass Spectrometry and Fluorescence Spectroscopy

PROTEOMICS, EarlyView.

— Agathe Depraz Depland, Stephanie Mikromanolis, Iuliia Stroganova, Anouk M. Rijs 2025-12-10 20:00:00

High‐Resolution Ion Mobility as an Alternative to Quadrupole‐Based Precursor Isolation for Reducing Chimeric Fragmentation Spectra in Bottom‐Up Proteomics

PROTEOMICS, EarlyView.

— Isabel R. Uribe, Liulin Deng, Leonard Rorrer III, Lauren Royer, Miriam Fico, Daniel DeBord 2025-12-05 20:00:00

Mass Spectrometry‐Based Quantification of Proteins and Post‐Translational Modifications in Dried Blood: Longitudinal Sampling of Patients With Sepsis in Tanzania

PROTEOMICS, EarlyView.

— Matthew W. Foster, Timothy J. McMahon, James S. Ngocho, Asia H. Kipengele, Marlene Violette, Youwei Chen, Deng B. Madut, Robert S. Plumb, A. lan Wong, Lingye Chen, Grace M. Lee, Philoteus A. Sakasaka, Blandina T. Mmbaga, John A. Crump, Micah T. McClain, Christopher W. Woods, Venance P. Maro, Matthew P. Rubach 2025-12-03 14:10:59

Proteomics of Prostate Cancer Tissue Small Extracellular Vesicles Reveal Alteration of Metabolism

PROTEOMICS, EarlyView.

— Lijuan Yu, Ting Ding, Roger Olofsson Bagge, Lei Zheng, Xiaoke Hao 2025-11-17 09:02:30

Orthodox vs. Paradox: Supporting the Central Dogma With Sugar Code

PROTEOMICS, EarlyView.

— Weijie Cao, Fangli Hu, Yueyang Li, Wei Wang 2025-11-17 20:17:37

Proteomic Profiling of Myofiber Repair Annexins and Their Role in Duchenne Muscular Dystrophy

PROTEOMICS, EarlyView.

— Paul Dowling, Dounia Bouragba, Elisa Negroni, Capucine Trollet, Margit Zweyer, Dieter Swandulla, Kay Ohlendieck 2025-11-11 13:23:57

See the Unseen: Rapid, Multiparametric Single‐Particle Analysis of Extracellular Vesicles With Nano‐Flow Cytometry

PROTEOMICS, EarlyView.

— Yunyun Hu, Qiujin Wu, Junyan Chen, Xin Chen, Haonan Di, Xiaomei Yan 2025-11-10 19:53:26

Top‐Down Proteomics and Proteoforms—The Train Speeds Up!

PROTEOMICS, EarlyView.

— Philipp T. Kaulich, Hartmut Schlüter, Andreas Tholey 2025-11-10 10:26:24

Advancing Extracellular Vesicle Research: A Review of Systems Biology and Multiomics Perspectives

PROTEOMICS, EarlyView.

— Gloria Kemunto, Samaneh Ghadami, Kristen Dellinger 2025-11-10 20:19:22

Multi‐Omics Assessment of Primed Tissue‐Specific MSCs‐sEV to Unveil Their Regenerative Potential

PROTEOMICS, EarlyView.

— Yashvi Sharma, Rama N. Behera, Naina Soni, Kiran Ambatipudi, Rashmi Rameshwari, Sabyasachi Bandyopadhyay, Sujata Mohanty 2025-10-21 16:38:25

Proteomic Changes in Cancer Cell Lines as a Result of Bacterial Infection

PROTEOMICS, EarlyView.

— Bo Ren, Kenneth Weke, Darryl Hardie, Mariya I. Goncheva, Ted Hupp, Javier Antonio Alfaro, Helena Pětrošová, David R. Goodlett 2025-10-20 15:51:55

Migrasomes, Matrix‐Bound Nanovesicles, and More: Messengers in the Matrix

PROTEOMICS, EarlyView.

— Anna V. Kolesov, Natalie Reitz, Marley Dewey, Colin L. Hisey 2025-10-14 18:52:32

Differential Proteomics of Large Extracellular Vesicles in Ovarian Cancer

PROTEOMICS, EarlyView.

— Kazuhiro Suzuki, Yusuke Yamamoto, Masami Kitagawa, Eri Asano‐Inami, Kosuke Yoshida, Hiroaki Kajiyama, Akira Yokoi 2025-10-02 17:37:40

Oncogenic H‐Ras Reprograms Madin‐Darby Canine Kidney (MDCK) Cell‐Derived Midbody Remnant Proteome Following Epithelial‐Mesenchymal Transition

PROTEOMICS, EarlyView.

— Adnan Shafiq, Alin Rai, Rong Xu, Maoshan Chen, Wittaya Suwakulsiri, David W. Greening, Richard J. Simpson 2025-10-01 08:46:04

Challenges and Opportunities in State‐of‐the‐Art Proteomics Analysis for Biomarker Development From Plasma Extracellular Vesicles

PROTEOMICS, EarlyView.

— Panshak P. Dakup, Ivo Diaz Ludovico, Youngki You, Chaitra Rao, Javier Flores, Lisa M. Bramer, Marian Rewers, Bobbie‐Jo M. Webb‐Robertson, Thomas O. Metz, Raghavendra G. Mirmira, Emily K. Sims, Ernesto S. Nakayasu 2025-09-16 09:45:18

Deconvolution Methods to Link Multi‐Omics Data to Cell Type‐Specific Extracellular Vesicle Abundances

PROTEOMICS, EarlyView.

— Iben Skov Jensen, Jannik Hjortshøj Larsen, Per Svenningsen 2025-09-15 13:05:55

Coupling CZE, Liquid‐Phase Ion Mobility, to MS/MS for Quantitative Top‐Down Proteomics: Revealing Significant Proteoform Differences Between Healthy and Alzheimer's Disease Brains

PROTEOMICS, EarlyView.

— Mehrdad Falamarzi Askarani, Fei Fang, Scott E. Counts, Liangliang Sun 2025-09-14 17:38:29

Omics Insights Into the Effects of Highbush Blueberry and Cranberry Crop Agroecosystems on Honey Bee Health and Physiology

PROTEOMICS, EarlyView.

— Huan Zhong, Yuming Shi, Aleksandra Kozlova, Renata Moravcova, Jason C. Rogalski, Aidan Jamieson, Lance Lansing, Kyung‐Mee Moon, Xiaojing Yuan, Amanda S. Gregoris, Heather Higo, Julia Common, Ida M. Conflitti, Mateus Pepinelli, Lan Tran, Morgan Cunningham, Hosna Jabbari, Syed Abbas Bukhari, Sarah K. French, Rodrigo Ortega Polo, Shelley E. Hoover, Stephen F. Pernal, Pierre Giovenazzo, M. Marta Guarna, Amro Zayed, Leonard J. Foster 2025-09-06 19:00:00

Nigericin‐Triggered Phosphodynamics in Inflammasome Formation and Pyroptosis

PROTEOMICS, EarlyView.

— Vanya Bhushan, Clinton J. Bradfield, Sandhini Saha, Sung Hwan Yoon, Iain D. C. Fraser, Aleksandra Nita‐Lazar 2025-09-02 19:00:00

Enhancing Lipidomics With High‐Resolution Ion Mobility‐Mass Spectrometry

PROTEOMICS, EarlyView.

— Gaoyuan Lu, Shuling Xu, Penghsuan Huang, Lingjun Li 2025-08-13 12:05:07

Revealing the Heterogeneity of Extracellular Vesicles: From Population to Single Particle Level

PROTEOMICS, EarlyView.

— Aixiang Bu, Guangyao Wu, Lianghai Hu 2025-08-05 08:04:39

Proteome Analysis of Corynebacterium diphtheriae–Macrophage Interaction

PROTEOMICS, EarlyView.

— Luca Musella, Jens Möller, Christopher Lischer, Julio Vera‐Gonzalez, Jörg Hofmann, Lisa Ott, Andreas Burkovski 2025-04-10 17:49:12